Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Gm14452-201ENSMUST00000118680 1632 ntBASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Ldha-ps-201ENSMUST00000119390 995 ntBASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Gm45059-201ENSMUST00000205558 1077 ntBASIC19.74■□□□□ 0.75
Usp40Q8BWR4 AC102291.3-201ENSMUST00000226566 405 ntBASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Gm14451-201ENSMUST00000121581 1542 ntBASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp40Q8BWR4 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 AC139580.1-202ENSMUST00000223574 928 ntBASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Usp40Q8BWR4 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC19.72■□□□□ 0.75
Usp40Q8BWR4 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Mir6392-201ENSMUST00000184924 108 ntBASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 AC132467.2-202ENSMUST00000227726 559 ntBASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Gm29340-201ENSMUST00000188763 3854 ntBASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp40Q8BWR4 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 AC154687.2-201ENSMUST00000223853 640 ntBASIC19.71■□□□□ 0.75
Usp40Q8BWR4 AC238811.3-201ENSMUST00000225422 709 ntBASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp40Q8BWR4 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms