Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Col17a1Q07563 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC21.75■■□□□ 1.07
Col17a1Q07563 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Col17a1Q07563 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC21.75■■□□□ 1.07
Col17a1Q07563 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
Col17a1Q07563 AC154222.2-201ENSMUST00000225848 607 ntBASIC21.75■■□□□ 1.07
Col17a1Q07563 AC169036.1-201ENSMUST00000227994 296 ntBASIC21.75■■□□□ 1.07
Col17a1Q07563 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col17a1Q07563 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC21.74■■□□□ 1.07
Col17a1Q07563 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Gm13611-201ENSMUST00000118269 318 ntBASIC21.74■■□□□ 1.07
Col17a1Q07563 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC21.74■■□□□ 1.07
Col17a1Q07563 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Col17a1Q07563 Gm11557-201ENSMUST00000120200 1008 ntBASIC21.74■■□□□ 1.07
Col17a1Q07563 Gm8927-201ENSMUST00000181978 981 ntBASIC21.74■■□□□ 1.07
Col17a1Q07563 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC21.74■■□□□ 1.07
Col17a1Q07563 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Col17a1Q07563 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Col17a1Q07563 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Col17a1Q07563 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC21.74■■□□□ 1.07
Col17a1Q07563 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Col17a1Q07563 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col17a1Q07563 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
Col17a1Q07563 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC21.73■■□□□ 1.07
Col17a1Q07563 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC21.73■■□□□ 1.07
Col17a1Q07563 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col17a1Q07563 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Col17a1Q07563 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Col17a1Q07563 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col17a1Q07563 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Col17a1Q07563 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC21.72■■□□□ 1.07
Col17a1Q07563 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Rn7s6-201ENSMUST00000175005 291 ntBASIC21.71■■□□□ 1.07
Col17a1Q07563 Gm18027-201ENSMUST00000218947 619 ntBASIC21.71■■□□□ 1.07
Col17a1Q07563 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col17a1Q07563 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Col17a1Q07563 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col17a1Q07563 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC21.71■■□□□ 1.07
Col17a1Q07563 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC21.71■■□□□ 1.07
Col17a1Q07563 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC21.71■■□□□ 1.07
Col17a1Q07563 Ighv8-14-201ENSMUST00000196781 358 ntBASIC21.71■■□□□ 1.07
Col17a1Q07563 AC154176.1-201ENSMUST00000225897 220 ntBASIC21.71■■□□□ 1.07
Col17a1Q07563 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col17a1Q07563 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC21.71■■□□□ 1.07
Col17a1Q07563 Gm25517-201ENSMUST00000083865 134 ntBASIC21.71■■□□□ 1.07
Col17a1Q07563 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Col17a1Q07563 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms