Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC16.14■□□□□ 0.17
Tpm1P58771 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.14■□□□□ 0.17
Tpm1P58771 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Tpm1P58771 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC16.14■□□□□ 0.17
Tpm1P58771 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC16.14■□□□□ 0.17
Tpm1P58771 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC16.14■□□□□ 0.17
Tpm1P58771 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Tpm1P58771 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC16.14■□□□□ 0.17
Tpm1P58771 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.13■□□□□ 0.17
Tpm1P58771 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC16.13■□□□□ 0.17
Tpm1P58771 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Tpm1P58771 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC16.13■□□□□ 0.17
Tpm1P58771 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Tpm1P58771 Gm33142-201ENSMUST00000193913 867 ntBASIC16.13■□□□□ 0.17
Tpm1P58771 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.13■□□□□ 0.17
Tpm1P58771 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.13■□□□□ 0.17
Tpm1P58771 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Tpm1P58771 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Tpm1P58771 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Tpm1P58771 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Tpm1P58771 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Gm13836-201ENSMUST00000121159 501 ntBASIC16.12■□□□□ 0.17
Tpm1P58771 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.12■□□□□ 0.17
Tpm1P58771 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Tpm1P58771 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.12■□□□□ 0.17
Tpm1P58771 Gm37153-201ENSMUST00000193637 231 ntBASIC16.12■□□□□ 0.17
Tpm1P58771 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.12■□□□□ 0.17
Tpm1P58771 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.12■□□□□ 0.17
Tpm1P58771 Ssr1-204ENSMUST00000225319 1610 ntBASIC16.12■□□□□ 0.17
Tpm1P58771 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Tpm1P58771 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Tpm1P58771 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Tpm1P58771 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.11■□□□□ 0.17
Tpm1P58771 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Tpm1P58771 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms