Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shmt1P50431 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Shmt1P50431 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shmt1P50431 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shmt1P50431 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Shmt1P50431 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Shmt1P50431 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Shmt1P50431 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
Shmt1P50431 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Gm24543-201ENSMUST00000103867 82 ntBASIC15.27■□□□□ 0.04
Shmt1P50431 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.27■□□□□ 0.04
Shmt1P50431 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Shd-206ENSMUST00000225145 998 ntBASIC15.27■□□□□ 0.04
Shmt1P50431 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.27■□□□□ 0.04
Shmt1P50431 AC123645.1-201ENSMUST00000228469 605 ntBASIC15.27■□□□□ 0.04
Shmt1P50431 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shmt1P50431 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Shmt1P50431 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shmt1P50431 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Shmt1P50431 AC162938.1-201ENSMUST00000213140 2323 ntBASIC15.26■□□□□ 0.03
Shmt1P50431 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Shmt1P50431 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Shmt1P50431 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC15.26■□□□□ 0.03
Shmt1P50431 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.26■□□□□ 0.03
Shmt1P50431 Gm25144-201ENSMUST00000179561 110 ntBASIC15.26■□□□□ 0.03
Shmt1P50431 Gm25352-201ENSMUST00000179815 110 ntBASIC15.26■□□□□ 0.03
Shmt1P50431 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.26■□□□□ 0.03
Shmt1P50431 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Shmt1P50431 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC15.26■□□□□ 0.03
Shmt1P50431 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.26■□□□□ 0.03
Shmt1P50431 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.26■□□□□ 0.03
Shmt1P50431 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shmt1P50431 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Shmt1P50431 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Shmt1P50431 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.25■□□□□ 0.03
Shmt1P50431 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Shmt1P50431 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Fbxl12-205ENSMUST00000140702 1555 ntBASIC15.25■□□□□ 0.03
Shmt1P50431 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
Shmt1P50431 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.25■□□□□ 0.03
Shmt1P50431 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Shmt1P50431 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Mir1897-201ENSMUST00000122581 272 ntBASIC15.25■□□□□ 0.03
Shmt1P50431 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Shmt1P50431 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC15.25■□□□□ 0.03
Shmt1P50431 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Shmt1P50431 Gm45453-201ENSMUST00000211758 853 ntBASIC15.25■□□□□ 0.03
Shmt1P50431 Dupd1-202ENSMUST00000224735 548 ntBASIC15.25■□□□□ 0.03
Shmt1P50431 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Shmt1P50431 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms