Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC13.67□□□□□ -0.22
Cdx2P43241 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cdx2P43241 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdx2P43241 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cdx2P43241 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdx2P43241 Gm18307-201ENSMUST00000206864 949 ntBASIC13.67□□□□□ -0.22
Cdx2P43241 Gm6007-201ENSMUST00000208170 823 ntBASIC13.67□□□□□ -0.22
Cdx2P43241 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC13.67□□□□□ -0.22
Cdx2P43241 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdx2P43241 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdx2P43241 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Cdx2P43241 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC13.67□□□□□ -0.22
Cdx2P43241 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.67□□□□□ -0.22
Cdx2P43241 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx2P43241 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Cdx2P43241 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.66□□□□□ -0.22
Cdx2P43241 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Cdx2P43241 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Cdx2P43241 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Gm6283-201ENSMUST00000182369 1000 ntBASIC13.66□□□□□ -0.22
Cdx2P43241 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.66□□□□□ -0.22
Cdx2P43241 Gm7446-201ENSMUST00000221035 1240 ntBASIC13.66□□□□□ -0.22
Cdx2P43241 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Gm5356-201ENSMUST00000093326 615 ntBASIC13.66□□□□□ -0.22
Cdx2P43241 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Cdx2P43241 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdx2P43241 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.66□□□□□ -0.22
Cdx2P43241 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Cdx2P43241 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC13.65□□□□□ -0.22
Cdx2P43241 Gm14780-201ENSMUST00000118387 2737 ntBASIC13.65□□□□□ -0.22
Cdx2P43241 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Cdx2P43241 Gm42690-201ENSMUST00000197921 1836 ntBASIC13.65□□□□□ -0.22
Cdx2P43241 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC13.65□□□□□ -0.22
Cdx2P43241 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Gm5303-201ENSMUST00000117943 1252 ntBASIC13.65□□□□□ -0.22
Cdx2P43241 Gm12882-201ENSMUST00000121696 517 ntBASIC13.65□□□□□ -0.22
Cdx2P43241 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC13.65□□□□□ -0.22
Cdx2P43241 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.65□□□□□ -0.22
Cdx2P43241 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC13.65□□□□□ -0.22
Cdx2P43241 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.65□□□□□ -0.22
Cdx2P43241 AC156560.2-201ENSMUST00000221232 264 ntBASIC13.65□□□□□ -0.22
Cdx2P43241 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Cdx2P43241 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Cdx2P43241 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdx2P43241 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms