Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Col1a1P11087 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC16.72■□□□□ 0.27
Col1a1P11087 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC16.72■□□□□ 0.27
Col1a1P11087 Gm27514-201ENSMUST00000183692 110 ntBASIC16.72■□□□□ 0.27
Col1a1P11087 Gm29649-201ENSMUST00000185649 419 ntBASIC16.72■□□□□ 0.27
Col1a1P11087 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC16.72■□□□□ 0.27
Col1a1P11087 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC16.72■□□□□ 0.27
Col1a1P11087 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col1a1P11087 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col1a1P11087 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Col1a1P11087 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
Col1a1P11087 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.71■□□□□ 0.27
Col1a1P11087 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Gm13689-201ENSMUST00000119360 685 ntBASIC16.71■□□□□ 0.27
Col1a1P11087 Gm24644-201ENSMUST00000157114 139 ntBASIC16.71■□□□□ 0.27
Col1a1P11087 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
Col1a1P11087 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC16.71■□□□□ 0.27
Col1a1P11087 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col1a1P11087 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC16.7■□□□□ 0.26
Col1a1P11087 Gm18222-201ENSMUST00000202416 1387 ntBASIC16.7■□□□□ 0.26
Col1a1P11087 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Col1a1P11087 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col1a1P11087 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Col1a1P11087 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC16.7■□□□□ 0.26
Col1a1P11087 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC16.7■□□□□ 0.26
Col1a1P11087 Gm24420-201ENSMUST00000176676 59 ntBASIC16.7■□□□□ 0.26
Col1a1P11087 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC16.7■□□□□ 0.26
Col1a1P11087 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC16.7■□□□□ 0.26
Col1a1P11087 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC16.7■□□□□ 0.26
Col1a1P11087 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col1a1P11087 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Gm15371-201ENSMUST00000117057 784 ntBASIC16.69■□□□□ 0.26
Col1a1P11087 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Col1a1P11087 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC16.69■□□□□ 0.26
Col1a1P11087 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC16.69■□□□□ 0.26
Col1a1P11087 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Col1a1P11087 Gm5370-201ENSMUST00000187187 574 ntBASIC16.69■□□□□ 0.26
Col1a1P11087 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC16.69■□□□□ 0.26
Col1a1P11087 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC16.69■□□□□ 0.26
Col1a1P11087 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.69■□□□□ 0.26
Col1a1P11087 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
Col1a1P11087 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col1a1P11087 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC16.69■□□□□ 0.26
Col1a1P11087 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col1a1P11087 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Gm16342-201ENSMUST00000124025 1025 ntBASIC16.68■□□□□ 0.26
Col1a1P11087 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC16.68■□□□□ 0.26
Col1a1P11087 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC16.68■□□□□ 0.26
Col1a1P11087 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Col1a1P11087 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Col1a1P11087 Olfr582-201ENSMUST00000098212 960 ntBASIC16.68■□□□□ 0.26
Col1a1P11087 Gm7553-201ENSMUST00000185805 1426 ntBASIC16.68■□□□□ 0.26
Col1a1P11087 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col1a1P11087 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Col1a1P11087 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Col1a1P11087 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms