Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Gm45667-201ENSMUST00000210380 1316 ntBASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ube3bQ9ES34 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Gm14719-201ENSMUST00000121891 340 ntBASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ube3bQ9ES34 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Gm7820-201ENSMUST00000121012 1052 ntBASIC17.16■□□□□ 0.34
Ube3bQ9ES34 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Gm27838-201ENSMUST00000184829 128 ntBASIC17.16■□□□□ 0.34
Ube3bQ9ES34 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 AC125206.2-201ENSMUST00000217454 574 ntBASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Ube3bQ9ES34 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Gm4875-201ENSMUST00000118257 786 ntBASIC17.15■□□□□ 0.34
Ube3bQ9ES34 AC132863.2-201ENSMUST00000226643 799 ntBASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Ube3bQ9ES34 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Ube3bQ9ES34 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Ube3bQ9ES34 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Ube3bQ9ES34 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ube3bQ9ES34 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms