Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Smc1aQ9CU62 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Ntrk2-209ENSMUST00000225950 2640 ntBASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Gm11453-201ENSMUST00000117318 1007 ntBASIC16.21■□□□□ 0.19
Smc1aQ9CU62 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Mir6990-201ENSMUST00000183724 91 ntBASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Smc1aQ9CU62 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
Smc1aQ9CU62 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Smc1aQ9CU62 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Smc1aQ9CU62 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Smc1aQ9CU62 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 CT025610.1-201ENSMUST00000224552 1786 ntBASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms