Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clp1Q99LI9 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clp1Q99LI9 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Clp1Q99LI9 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clp1Q99LI9 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Gm5912-201ENSMUST00000122282 1438 ntBASIC15.18■□□□□ 0.02
Clp1Q99LI9 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Clp1Q99LI9 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 AC110817.1-201ENSMUST00000225706 605 ntBASIC15.18■□□□□ 0.02
Clp1Q99LI9 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clp1Q99LI9 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 AC093043.3-201ENSMUST00000226531 2273 ntBASIC15.17■□□□□ 0.02
Clp1Q99LI9 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Gm15240-201ENSMUST00000118156 720 ntBASIC15.17■□□□□ 0.02
Clp1Q99LI9 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Gm27839-201ENSMUST00000184242 106 ntBASIC15.17■□□□□ 0.02
Clp1Q99LI9 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Gm7067-201ENSMUST00000207698 1249 ntBASIC15.17■□□□□ 0.02
Clp1Q99LI9 Gm45841-201ENSMUST00000207700 164 ntBASIC15.17■□□□□ 0.02
Clp1Q99LI9 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clp1Q99LI9 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Mup-ps23-201ENSMUST00000118063 630 ntBASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gm8835-201ENSMUST00000173096 1169 ntBASIC15.16■□□□□ 0.02
Clp1Q99LI9 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gm2495-201ENSMUST00000191160 466 ntBASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Clp1Q99LI9 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Clp1Q99LI9 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC15.15■□□□□ 0.02
Clp1Q99LI9 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Clp1Q99LI9 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Clp1Q99LI9 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms