Protein–RNA interactions for Protein: Q920F6

Smc1b, Structural maintenance of chromosomes protein 1B, mousemouse

Predictions only

Length 1,248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1bQ920F6 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Smc1bQ920F6 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Smc1bQ920F6 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Smc1bQ920F6 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Smc1bQ920F6 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Smc1bQ920F6 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Smc1bQ920F6 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Gm42934-201ENSMUST00000196920 1345 ntBASIC16.73■□□□□ 0.27
Smc1bQ920F6 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC16.73■□□□□ 0.27
Smc1bQ920F6 Gm16026-204ENSMUST00000162652 683 ntBASIC16.73■□□□□ 0.27
Smc1bQ920F6 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Smc1bQ920F6 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Gm8116-201ENSMUST00000182917 1201 ntBASIC16.72■□□□□ 0.27
Smc1bQ920F6 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Smc1bQ920F6 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Gm27680-201ENSMUST00000184192 160 ntBASIC16.71■□□□□ 0.27
Smc1bQ920F6 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Smc1bQ920F6 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Smc1bQ920F6 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC16.71■□□□□ 0.27
Smc1bQ920F6 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Smc1bQ920F6 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.7■□□□□ 0.26
Smc1bQ920F6 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Gm13015-201ENSMUST00000118674 204 ntBASIC16.7■□□□□ 0.26
Smc1bQ920F6 Gm14722-201ENSMUST00000118943 689 ntBASIC16.7■□□□□ 0.26
Smc1bQ920F6 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC16.7■□□□□ 0.26
Smc1bQ920F6 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC16.7■□□□□ 0.26
Smc1bQ920F6 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms