Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Gm13015-201ENSMUST00000118674 204 ntBASIC17.48■□□□□ 0.39
Brf1Q8CFK2 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Brf1Q8CFK2 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 AC148324.1-201ENSMUST00000219034 4240 ntBASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Gm42466-201ENSMUST00000202099 1301 ntBASIC17.47■□□□□ 0.39
Brf1Q8CFK2 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Gm25287-201ENSMUST00000103846 110 ntBASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Gm22918-201ENSMUST00000103855 110 ntBASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Gm26308-201ENSMUST00000157768 69 ntBASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Gm8116-201ENSMUST00000182917 1201 ntBASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Brf1Q8CFK2 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Brf1Q8CFK2 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Brf1Q8CFK2 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Brf1Q8CFK2 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Brf1Q8CFK2 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms