Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Gm14042-201ENSMUST00000120139 833 ntBASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp49Q6P9L4 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Gm6756-201ENSMUST00000180647 1620 ntBASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Usp49Q6P9L4 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
Usp49Q6P9L4 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Usp49Q6P9L4 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.21■□□□□ 0.18
Usp49Q6P9L4 Gm43056-201ENSMUST00000197865 2791 ntBASIC16.21■□□□□ 0.18
Usp49Q6P9L4 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Gm18057-201ENSMUST00000208220 503 ntBASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
Usp49Q6P9L4 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usp49Q6P9L4 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms