Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trim28Q62318 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim28Q62318 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC18.69■□□□□ 0.58
Trim28Q62318 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC18.69■□□□□ 0.58
Trim28Q62318 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trim28Q62318 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim28Q62318 AC139580.1-202ENSMUST00000223574 928 ntBASIC18.69■□□□□ 0.58
Trim28Q62318 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trim28Q62318 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim28Q62318 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC18.68■□□□□ 0.58
Trim28Q62318 Gm44981-201ENSMUST00000205549 1943 ntBASIC18.68■□□□□ 0.58
Trim28Q62318 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC18.68■□□□□ 0.58
Trim28Q62318 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC18.68■□□□□ 0.58
Trim28Q62318 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 AC166574.6-201ENSMUST00000227889 1806 ntBASIC18.68■□□□□ 0.58
Trim28Q62318 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Trim28Q62318 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Trim28Q62318 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Gm5186-201ENSMUST00000218781 920 ntBASIC18.68■□□□□ 0.58
Trim28Q62318 Gm18027-201ENSMUST00000218947 619 ntBASIC18.68■□□□□ 0.58
Trim28Q62318 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC18.68■□□□□ 0.58
Trim28Q62318 Gm15823-201ENSMUST00000064305 670 ntBASIC18.68■□□□□ 0.58
Trim28Q62318 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Trim28Q62318 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.68■□□□□ 0.58
Trim28Q62318 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim28Q62318 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 Gm43598-201ENSMUST00000202482 2479 ntBASIC18.67■□□□□ 0.58
Trim28Q62318 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC18.67■□□□□ 0.58
Trim28Q62318 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trim28Q62318 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC18.67■□□□□ 0.58
Trim28Q62318 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC18.67■□□□□ 0.58
Trim28Q62318 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC18.67■□□□□ 0.58
Trim28Q62318 Gm18624-201ENSMUST00000220966 658 ntBASIC18.67■□□□□ 0.58
Trim28Q62318 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Trim28Q62318 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 Gm42690-201ENSMUST00000197921 1836 ntBASIC18.67■□□□□ 0.58
Trim28Q62318 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim28Q62318 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Trim28Q62318 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim28Q62318 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim28Q62318 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trim28Q62318 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim28Q62318 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim28Q62318 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Gm37917-201ENSMUST00000194711 392 ntBASIC18.66■□□□□ 0.58
Trim28Q62318 Gm7653-201ENSMUST00000214567 508 ntBASIC18.66■□□□□ 0.58
Trim28Q62318 AC238811.3-201ENSMUST00000225422 709 ntBASIC18.66■□□□□ 0.58
Trim28Q62318 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim28Q62318 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim28Q62318 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Trim28Q62318 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC18.65■□□□□ 0.58
Trim28Q62318 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Gm18018-201ENSMUST00000198273 408 ntBASIC18.65■□□□□ 0.58
Trim28Q62318 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms