Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC15.2■□□□□ 0.02
Upf3aQ3ULJ3 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 AC238811.3-201ENSMUST00000225422 709 ntBASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3aQ3ULJ3 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Gm8602-201ENSMUST00000184045 607 ntBASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3aQ3ULJ3 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Gm12882-201ENSMUST00000121696 517 ntBASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Gm5354-201ENSMUST00000182417 973 ntBASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 AC139580.1-202ENSMUST00000223574 928 ntBASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Upf3aQ3ULJ3 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Upf3aQ3ULJ3 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms