Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.05■□□□□ 0.32
Limch1Q3UH68 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Mir7023-201ENSMUST00000185093 64 ntBASIC17.05■□□□□ 0.32
Limch1Q3UH68 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 AC131187.1-201ENSMUST00000224567 809 ntBASIC17.05■□□□□ 0.32
Limch1Q3UH68 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.05■□□□□ 0.32
Limch1Q3UH68 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Nudt18-203ENSMUST00000228768 1578 ntBASIC17.04■□□□□ 0.32
Limch1Q3UH68 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Mir449b-201ENSMUST00000104833 80 ntBASIC17.04■□□□□ 0.32
Limch1Q3UH68 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC17.04■□□□□ 0.32
Limch1Q3UH68 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Gm4691-201ENSMUST00000182339 1000 ntBASIC17.04■□□□□ 0.32
Limch1Q3UH68 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Gm2451-201ENSMUST00000199447 999 ntBASIC17.04■□□□□ 0.32
Limch1Q3UH68 Gm10290-201ENSMUST00000200451 999 ntBASIC17.04■□□□□ 0.32
Limch1Q3UH68 Gm4081-201ENSMUST00000195287 1838 ntBASIC17.04■□□□□ 0.32
Limch1Q3UH68 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Sorbs3-204ENSMUST00000227929 2460 ntBASIC17.04■□□□□ 0.32
Limch1Q3UH68 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Limch1Q3UH68 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.03■□□□□ 0.32
Limch1Q3UH68 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 AC124732.2-201ENSMUST00000221977 316 ntBASIC17.03■□□□□ 0.32
Limch1Q3UH68 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
Limch1Q3UH68 Gm13127-201ENSMUST00000118978 1389 ntBASIC17.02■□□□□ 0.32
Limch1Q3UH68 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms