Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm11453-201ENSMUST00000117318 1007 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm8097-201ENSMUST00000117903 829 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm14822-201ENSMUST00000122247 291 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm24513-201ENSMUST00000174964 138 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm27397-201ENSMUST00000184997 107 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 AC225888.1-201ENSMUST00000227184 728 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col28a1Q2UY11 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Col28a1Q2UY11 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
Col28a1Q2UY11 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Gm13036-201ENSMUST00000117799 748 ntBASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Gm14451-201ENSMUST00000121581 1542 ntBASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC14.08□□□□□ -0.16
Col28a1Q2UY11 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Gm11780-201ENSMUST00000136880 516 ntBASIC14.07□□□□□ -0.16
Col28a1Q2UY11 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Gm9727-201ENSMUST00000161387 555 ntBASIC14.07□□□□□ -0.16
Col28a1Q2UY11 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 AC090659.1-201ENSMUST00000224334 768 ntBASIC14.07□□□□□ -0.16
Col28a1Q2UY11 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col28a1Q2UY11 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms