Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 AC124392.1-201ENSMUST00000225172 5324 ntBASIC18.83■□□□□ 0.61
Col18a1P39061 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col18a1P39061 Gm6015-201ENSMUST00000217493 1586 ntBASIC18.83■□□□□ 0.6
Col18a1P39061 Gm45760-201ENSMUST00000212190 1782 ntBASIC18.83■□□□□ 0.6
Col18a1P39061 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col18a1P39061 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Col18a1P39061 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col18a1P39061 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col18a1P39061 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Col18a1P39061 Gm15544-201ENSMUST00000118776 1531 ntBASIC18.82■□□□□ 0.6
Col18a1P39061 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Col18a1P39061 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC18.82■□□□□ 0.6
Col18a1P39061 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC18.82■□□□□ 0.6
Col18a1P39061 Gm4819-201ENSMUST00000182170 1009 ntBASIC18.82■□□□□ 0.6
Col18a1P39061 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Gm9755-201ENSMUST00000032981 1356 ntBASIC18.82■□□□□ 0.6
Col18a1P39061 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col18a1P39061 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Gm22902-201ENSMUST00000158488 302 ntBASIC18.81■□□□□ 0.6
Col18a1P39061 Gm10608-202ENSMUST00000213924 676 ntBASIC18.81■□□□□ 0.6
Col18a1P39061 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Col18a1P39061 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Gm10040-201ENSMUST00000080726 1662 ntBASIC18.81■□□□□ 0.6
Col18a1P39061 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Col18a1P39061 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC18.81■□□□□ 0.6
Col18a1P39061 Gm11964-201ENSMUST00000120982 444 ntBASIC18.81■□□□□ 0.6
Col18a1P39061 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Col18a1P39061 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Col18a1P39061 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC18.81■□□□□ 0.6
Col18a1P39061 Gm37986-201ENSMUST00000193285 383 ntBASIC18.81■□□□□ 0.6
Col18a1P39061 Gm45684-201ENSMUST00000210244 1571 ntBASIC18.81■□□□□ 0.6
Col18a1P39061 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col18a1P39061 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col18a1P39061 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC18.8■□□□□ 0.6
Col18a1P39061 Gm43947-201ENSMUST00000203019 959 ntBASIC18.8■□□□□ 0.6
Col18a1P39061 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC18.8■□□□□ 0.6
Col18a1P39061 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col18a1P39061 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Col18a1P39061 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC18.79■□□□□ 0.6
Col18a1P39061 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col18a1P39061 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col18a1P39061 Gm11591-201ENSMUST00000120063 702 ntBASIC18.79■□□□□ 0.6
Col18a1P39061 Gm3890-201ENSMUST00000182416 207 ntBASIC18.79■□□□□ 0.6
Col18a1P39061 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC18.79■□□□□ 0.6
Col18a1P39061 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col18a1P39061 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col18a1P39061 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms