Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
RaraP11416 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RaraP11416 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.67■□□□□ 0.1
RaraP11416 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RaraP11416 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RaraP11416 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RaraP11416 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
RaraP11416 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
RaraP11416 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RaraP11416 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC15.66■□□□□ 0.1
RaraP11416 Gm37230-201ENSMUST00000194491 818 ntBASIC15.66■□□□□ 0.1
RaraP11416 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
RaraP11416 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RaraP11416 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RaraP11416 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
RaraP11416 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.65■□□□□ 0.1
RaraP11416 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
RaraP11416 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC15.65■□□□□ 0.1
RaraP11416 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC15.65■□□□□ 0.1
RaraP11416 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
RaraP11416 Mir7036b-201ENSMUST00000184791 63 ntBASIC15.65■□□□□ 0.1
RaraP11416 Gm45747-201ENSMUST00000212203 999 ntBASIC15.65■□□□□ 0.1
RaraP11416 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Gm19863-201ENSMUST00000192480 2218 ntBASIC15.65■□□□□ 0.1
RaraP11416 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.65■□□□□ 0.1
RaraP11416 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.65■□□□□ 0.1
RaraP11416 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
RaraP11416 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.65■□□□□ 0.1
RaraP11416 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
RaraP11416 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RaraP11416 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.65■□□□□ 0.1
RaraP11416 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RaraP11416 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RaraP11416 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC15.64■□□□□ 0.09
RaraP11416 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
RaraP11416 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 70.4 ms