Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Gm5479-201ENSMUST00000160578 435 ntBASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Gm9824-201ENSMUST00000178707 561 ntBASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Ighv8-7-201ENSMUST00000194349 297 ntBASIC14.89□□□□□ -0.03
Vps28Q9D1C8 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps28Q9D1C8 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Gm8749-201ENSMUST00000117737 331 ntBASIC14.88□□□□□ -0.03
Vps28Q9D1C8 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Gm9726-201ENSMUST00000180321 678 ntBASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Gm4691-201ENSMUST00000182339 1000 ntBASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Gm2451-201ENSMUST00000199447 999 ntBASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Gm10290-201ENSMUST00000200451 999 ntBASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Gm45098-201ENSMUST00000207179 657 ntBASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps28Q9D1C8 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Gm5779-201ENSMUST00000218467 910 ntBASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps28Q9D1C8 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms