Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC16.32■□□□□ 0.2
Syne4Q8CII8 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 AC155258.1-201ENSMUST00000219303 253 ntBASIC16.32■□□□□ 0.2
Syne4Q8CII8 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.32■□□□□ 0.2
Syne4Q8CII8 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Syne4Q8CII8 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Syne4Q8CII8 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Gm12882-201ENSMUST00000121696 517 ntBASIC16.3■□□□□ 0.2
Syne4Q8CII8 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Gm45331-201ENSMUST00000209868 554 ntBASIC16.3■□□□□ 0.2
Syne4Q8CII8 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Syne4Q8CII8 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Syne4Q8CII8 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms