Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC17.52■□□□□ 0.4
Brf1Q8CFK2 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Brf1Q8CFK2 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Brf1Q8CFK2 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Gm14042-201ENSMUST00000120139 833 ntBASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC17.5■□□□□ 0.39
Brf1Q8CFK2 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 AC158529.1-201ENSMUST00000223618 239 ntBASIC17.5■□□□□ 0.39
Brf1Q8CFK2 AC131710.1-201ENSMUST00000228336 990 ntBASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Brf1Q8CFK2 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Gm44981-201ENSMUST00000205549 1943 ntBASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 AC155729.1-201ENSMUST00000227758 544 ntBASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Brf1Q8CFK2 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms