Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Gm4691-201ENSMUST00000182339 1000 ntBASIC16.08■□□□□ 0.16
Ift88Q61371 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.08■□□□□ 0.16
Ift88Q61371 Gm2451-201ENSMUST00000199447 999 ntBASIC16.08■□□□□ 0.16
Ift88Q61371 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Gm10290-201ENSMUST00000200451 999 ntBASIC16.08■□□□□ 0.16
Ift88Q61371 Olfr286-202ENSMUST00000205305 969 ntBASIC16.08■□□□□ 0.16
Ift88Q61371 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.08■□□□□ 0.16
Ift88Q61371 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.08■□□□□ 0.16
Ift88Q61371 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Ift88Q61371 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
Ift88Q61371 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ift88Q61371 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC16.08■□□□□ 0.16
Ift88Q61371 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC16.08■□□□□ 0.16
Ift88Q61371 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC16.08■□□□□ 0.16
Ift88Q61371 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
Ift88Q61371 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.07■□□□□ 0.16
Ift88Q61371 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Gm8597-201ENSMUST00000191525 1109 ntBASIC16.07■□□□□ 0.16
Ift88Q61371 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC16.07■□□□□ 0.16
Ift88Q61371 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.07■□□□□ 0.16
Ift88Q61371 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC16.07■□□□□ 0.16
Ift88Q61371 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ift88Q61371 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Ift88Q61371 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Ift88Q61371 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Ift88Q61371 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC16.06■□□□□ 0.16
Ift88Q61371 Gm14042-201ENSMUST00000120139 833 ntBASIC16.06■□□□□ 0.16
Ift88Q61371 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.06■□□□□ 0.16
Ift88Q61371 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.06■□□□□ 0.16
Ift88Q61371 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.06■□□□□ 0.16
Ift88Q61371 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Ift88Q61371 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ift88Q61371 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
Ift88Q61371 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Gm6944-201ENSMUST00000182449 1006 ntBASIC16.05■□□□□ 0.16
Ift88Q61371 Gm27300-201ENSMUST00000184085 97 ntBASIC16.05■□□□□ 0.16
Ift88Q61371 Gm27335-201ENSMUST00000184758 97 ntBASIC16.05■□□□□ 0.16
Ift88Q61371 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.05■□□□□ 0.16
Ift88Q61371 Gm2272-201ENSMUST00000194903 582 ntBASIC16.05■□□□□ 0.16
Ift88Q61371 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ift88Q61371 Gm42471-201ENSMUST00000201457 1865 ntBASIC16.05■□□□□ 0.16
Ift88Q61371 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Ift88Q61371 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms