Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Gm11745-201ENSMUST00000121669 448 ntBASIC13.94□□□□□ -0.18
ClpbQ60649 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.94□□□□□ -0.18
ClpbQ60649 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.94□□□□□ -0.18
ClpbQ60649 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC13.94□□□□□ -0.18
ClpbQ60649 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC13.94□□□□□ -0.18
ClpbQ60649 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.94□□□□□ -0.18
ClpbQ60649 CT025555.1-201ENSMUST00000225901 1217 ntBASIC13.94□□□□□ -0.18
ClpbQ60649 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
ClpbQ60649 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC13.93□□□□□ -0.18
ClpbQ60649 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
ClpbQ60649 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Gm5628-201ENSMUST00000222318 1049 ntBASIC13.93□□□□□ -0.18
ClpbQ60649 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
ClpbQ60649 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
ClpbQ60649 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ClpbQ60649 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ClpbQ60649 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC13.93□□□□□ -0.18
ClpbQ60649 Gm43205-201ENSMUST00000198622 1968 ntBASIC13.92□□□□□ -0.18
ClpbQ60649 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ClpbQ60649 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Gm8096-201ENSMUST00000209921 1591 ntBASIC13.92□□□□□ -0.18
ClpbQ60649 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
ClpbQ60649 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.92□□□□□ -0.18
ClpbQ60649 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ClpbQ60649 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ClpbQ60649 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
ClpbQ60649 Gm14701-201ENSMUST00000117156 348 ntBASIC13.92□□□□□ -0.18
ClpbQ60649 Gm15593-201ENSMUST00000122085 1008 ntBASIC13.92□□□□□ -0.18
ClpbQ60649 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ClpbQ60649 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
ClpbQ60649 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC13.92□□□□□ -0.18
ClpbQ60649 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC13.92□□□□□ -0.18
ClpbQ60649 Gm13332-201ENSMUST00000120451 1398 ntBASIC13.92□□□□□ -0.18
ClpbQ60649 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
ClpbQ60649 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ClpbQ60649 Gm44645-201ENSMUST00000205492 1653 ntBASIC13.91□□□□□ -0.18
ClpbQ60649 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ClpbQ60649 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
ClpbQ60649 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ClpbQ60649 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
ClpbQ60649 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC13.91□□□□□ -0.18
ClpbQ60649 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.91□□□□□ -0.18
ClpbQ60649 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms