Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gm4995-201ENSMUST00000117247 432 ntBASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gm6550-201ENSMUST00000187574 993 ntBASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gm8655-201ENSMUST00000221159 852 ntBASIC14.12□□□□□ -0.15
Col28a1Q2UY11 AV026068-213ENSMUST00000223675 1171 ntBASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Gm6089-201ENSMUST00000197666 938 ntBASIC14.11□□□□□ -0.15
Col28a1Q2UY11 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col28a1Q2UY11 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Gm14140-201ENSMUST00000119999 995 ntBASIC14.1□□□□□ -0.15
Col28a1Q2UY11 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Gm27628-201ENSMUST00000184911 107 ntBASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col28a1Q2UY11 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms