Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Tcf21-202ENSMUST00000218002 1788 ntBASIC13.07□□□□□ -0.32
Pcdh1F7BJK1 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Gm17971-201ENSMUST00000190239 806 ntBASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Gm7787-201ENSMUST00000216858 688 ntBASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Gm42872-201ENSMUST00000200026 1967 ntBASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Pcdh1F7BJK1 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Gm7222-201ENSMUST00000117512 906 ntBASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Olfr286-202ENSMUST00000205305 969 ntBASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Rps4l-201ENSMUST00000071745 943 ntBASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Pcdh1F7BJK1 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms