Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Chd3B1AR17 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Chd3B1AR17 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Chd3B1AR17 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Chd3B1AR17 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Chd3B1AR17 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Chd3B1AR17 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Chd3B1AR17 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.21□□□□□ -0.14
Chd3B1AR17 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.21□□□□□ -0.14
Chd3B1AR17 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC14.21□□□□□ -0.14
Chd3B1AR17 Gm7390-201ENSMUST00000212452 1216 ntBASIC14.21□□□□□ -0.14
Chd3B1AR17 AC156016.3-201ENSMUST00000228623 344 ntBASIC14.21□□□□□ -0.14
Chd3B1AR17 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Chd3B1AR17 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Chd3B1AR17 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Gm4875-201ENSMUST00000118257 786 ntBASIC14.2□□□□□ -0.14
Chd3B1AR17 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Gm24694-201ENSMUST00000180054 110 ntBASIC14.2□□□□□ -0.14
Chd3B1AR17 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Gm5745-201ENSMUST00000183748 313 ntBASIC14.2□□□□□ -0.14
Chd3B1AR17 Gm27663-201ENSMUST00000184839 110 ntBASIC14.2□□□□□ -0.14
Chd3B1AR17 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC14.2□□□□□ -0.14
Chd3B1AR17 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Chd3B1AR17 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Chd3B1AR17 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC14.19□□□□□ -0.14
Chd3B1AR17 Gm5320-201ENSMUST00000207163 1519 ntBASIC14.19□□□□□ -0.14
Chd3B1AR17 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC14.19□□□□□ -0.14
Chd3B1AR17 Gm15487-201ENSMUST00000122373 465 ntBASIC14.19□□□□□ -0.14
Chd3B1AR17 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Chd3B1AR17 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Chd3B1AR17 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC14.19□□□□□ -0.14
Chd3B1AR17 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Gm16476-201ENSMUST00000221544 139 ntBASIC14.19□□□□□ -0.14
Chd3B1AR17 Gm9229-201ENSMUST00000222777 126 ntBASIC14.19□□□□□ -0.14
Chd3B1AR17 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC14.19□□□□□ -0.14
Chd3B1AR17 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Chd3B1AR17 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC14.19□□□□□ -0.14
Chd3B1AR17 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Chd3B1AR17 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Chd3B1AR17 Mir1897-201ENSMUST00000122581 272 ntBASIC14.18□□□□□ -0.14
Chd3B1AR17 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Chd3B1AR17 Gm6218-201ENSMUST00000219812 628 ntBASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms