Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Asic1-205ENSMUST00000228185 1818 ntBASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Cd63-ps-201ENSMUST00000145417 875 ntBASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim54Q9ERP3 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gm7488-201ENSMUST00000117148 684 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gm6222-201ENSMUST00000120787 396 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gm27631-201ENSMUST00000184163 466 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gm46209-201ENSMUST00000217912 553 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 AC149588.3-201ENSMUST00000227515 150 ntBASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim54Q9ERP3 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Gm9726-201ENSMUST00000180321 678 ntBASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Dupd1-202ENSMUST00000224735 548 ntBASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim54Q9ERP3 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Olfr286-202ENSMUST00000205305 969 ntBASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Gm30437-201ENSMUST00000206086 1201 ntBASIC15.71■□□□□ 0.11
Trim54Q9ERP3 AC135669.1-201ENSMUST00000213585 412 ntBASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Gm16476-201ENSMUST00000221544 139 ntBASIC15.71■□□□□ 0.11
Trim54Q9ERP3 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim54Q9ERP3 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms