Protein–RNA interactions for Protein: Q99MQ5

Col25a1, Collagen alpha-1(XXV) chain, mousemouse

Predictions only

Length 666 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col25a1Q99MQ5 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.03■□□□□ -0
Col25a1Q99MQ5 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Gm5370-201ENSMUST00000187187 574 ntBASIC15.03■□□□□ -0
Col25a1Q99MQ5 Gm38266-201ENSMUST00000194931 421 ntBASIC15.03■□□□□ -0
Col25a1Q99MQ5 Gm9299-201ENSMUST00000206392 1140 ntBASIC15.03■□□□□ -0
Col25a1Q99MQ5 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col25a1Q99MQ5 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Gm26083-201ENSMUST00000157904 193 ntBASIC15.02■□□□□ -0
Col25a1Q99MQ5 Gm6257-201ENSMUST00000163864 910 ntBASIC15.02■□□□□ -0
Col25a1Q99MQ5 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Mir7032-201ENSMUST00000185154 79 ntBASIC15.02■□□□□ -0
Col25a1Q99MQ5 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Col25a1Q99MQ5 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC15.02□□□□□ -0.01
Col25a1Q99MQ5 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Gm8565-201ENSMUST00000183259 1014 ntBASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 AC126253.1-201ENSMUST00000227974 824 ntBASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col25a1Q99MQ5 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col25a1Q99MQ5 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Gm45212-201ENSMUST00000205831 3403 ntBASIC15□□□□□ -0.01
Col25a1Q99MQ5 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15□□□□□ -0.01
Col25a1Q99MQ5 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC15□□□□□ -0.01
Col25a1Q99MQ5 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms