Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim9Q8C7M3 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.03■□□□□ 0.16
Trim9Q8C7M3 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Gm2810-201ENSMUST00000118681 990 ntBASIC16.03■□□□□ 0.16
Trim9Q8C7M3 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim9Q8C7M3 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Gm42934-201ENSMUST00000196920 1345 ntBASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Gm10275-202ENSMUST00000168697 495 ntBASIC16.02■□□□□ 0.16
Trim9Q8C7M3 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Gm10275-201ENSMUST00000092620 635 ntBASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim9Q8C7M3 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim9Q8C7M3 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Gm6756-201ENSMUST00000180647 1620 ntBASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Gm18737-201ENSMUST00000173594 937 ntBASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.01■□□□□ 0.15
Trim9Q8C7M3 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.01■□□□□ 0.15
Trim9Q8C7M3 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim9Q8C7M3 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms