Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Gm7461-201ENSMUST00000058918 827 ntBASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ccdc40Q8BI79 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ccdc40Q8BI79 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Ccdc40Q8BI79 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ccdc40Q8BI79 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ccdc40Q8BI79 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms