Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Gm9449-201ENSMUST00000207265 1011 ntBASIC15.73■□□□□ 0.11
RaraP11416 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
RaraP11416 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Mmp14-206ENSMUST00000225641 3238 ntBASIC15.73■□□□□ 0.11
RaraP11416 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC15.73■□□□□ 0.11
RaraP11416 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
RaraP11416 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
RaraP11416 AC122901.1-201ENSMUST00000214203 1790 ntBASIC15.72■□□□□ 0.11
RaraP11416 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
RaraP11416 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
RaraP11416 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC15.72■□□□□ 0.11
RaraP11416 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.72■□□□□ 0.11
RaraP11416 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
RaraP11416 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.72■□□□□ 0.11
RaraP11416 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC15.72■□□□□ 0.11
RaraP11416 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
RaraP11416 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.72■□□□□ 0.11
RaraP11416 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RaraP11416 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
RaraP11416 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
RaraP11416 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC15.71■□□□□ 0.11
RaraP11416 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
RaraP11416 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
RaraP11416 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.71■□□□□ 0.11
RaraP11416 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC15.71■□□□□ 0.11
RaraP11416 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC15.71■□□□□ 0.11
RaraP11416 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
RaraP11416 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.71■□□□□ 0.11
RaraP11416 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC15.71■□□□□ 0.11
RaraP11416 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC15.71■□□□□ 0.11
RaraP11416 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC15.71■□□□□ 0.11
RaraP11416 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RaraP11416 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
RaraP11416 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
RaraP11416 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
RaraP11416 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
RaraP11416 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RaraP11416 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RaraP11416 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RaraP11416 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RaraP11416 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RaraP11416 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms