Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.68■□□□□ 0.1
Vti1aO89116 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Vti1aO89116 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC15.68■□□□□ 0.1
Vti1aO89116 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
Vti1aO89116 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.68■□□□□ 0.1
Vti1aO89116 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vti1aO89116 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Gm11424-201ENSMUST00000121929 829 ntBASIC15.67■□□□□ 0.1
Vti1aO89116 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Vti1aO89116 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Gm27306-201ENSMUST00000183970 107 ntBASIC15.67■□□□□ 0.1
Vti1aO89116 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.67■□□□□ 0.1
Vti1aO89116 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.67■□□□□ 0.1
Vti1aO89116 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.67■□□□□ 0.1
Vti1aO89116 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC15.67■□□□□ 0.1
Vti1aO89116 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.67■□□□□ 0.1
Vti1aO89116 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Vti1aO89116 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.67■□□□□ 0.1
Vti1aO89116 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC15.67■□□□□ 0.1
Vti1aO89116 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vti1aO89116 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.66■□□□□ 0.1
Vti1aO89116 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Vti1aO89116 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.66■□□□□ 0.1
Vti1aO89116 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Vti1aO89116 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Vti1aO89116 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.66■□□□□ 0.1
Vti1aO89116 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC15.66■□□□□ 0.1
Vti1aO89116 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.66■□□□□ 0.1
Vti1aO89116 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Vti1aO89116 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.66■□□□□ 0.1
Vti1aO89116 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.66■□□□□ 0.1
Vti1aO89116 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.66■□□□□ 0.1
Vti1aO89116 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.66■□□□□ 0.1
Vti1aO89116 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Vti1aO89116 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vti1aO89116 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Vti1aO89116 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vti1aO89116 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Vti1aO89116 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vti1aO89116 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vti1aO89116 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vti1aO89116 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Vti1aO89116 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vti1aO89116 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Vti1aO89116 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms