Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Cbx4O55187 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Cbx4O55187 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.25□□□□□ -0.13
Cbx4O55187 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Cbx4O55187 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC14.25□□□□□ -0.13
Cbx4O55187 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.25□□□□□ -0.13
Cbx4O55187 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC14.25□□□□□ -0.13
Cbx4O55187 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Cbx4O55187 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cbx4O55187 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Cbx4O55187 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.24□□□□□ -0.13
Cbx4O55187 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Cbx4O55187 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Cbx4O55187 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC14.24□□□□□ -0.13
Cbx4O55187 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Gm9182-201ENSMUST00000217829 639 ntBASIC14.24□□□□□ -0.13
Cbx4O55187 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cbx4O55187 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cbx4O55187 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Cbx4O55187 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Gm44981-201ENSMUST00000205549 1943 ntBASIC14.23□□□□□ -0.13
Cbx4O55187 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Cbx4O55187 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC14.23□□□□□ -0.13
Cbx4O55187 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Cbx4O55187 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC14.23□□□□□ -0.13
Cbx4O55187 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.23□□□□□ -0.13
Cbx4O55187 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Cbx4O55187 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Cbx4O55187 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Cbx4O55187 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Cbx4O55187 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.23□□□□□ -0.13
Cbx4O55187 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cbx4O55187 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.22□□□□□ -0.13
Cbx4O55187 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Cbx4O55187 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.22□□□□□ -0.13
Cbx4O55187 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Cbx4O55187 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC14.22□□□□□ -0.13
Cbx4O55187 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC14.22□□□□□ -0.13
Cbx4O55187 Gm15483-201ENSMUST00000120338 456 ntBASIC14.22□□□□□ -0.13
Cbx4O55187 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.22□□□□□ -0.13
Cbx4O55187 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.22□□□□□ -0.13
Cbx4O55187 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC14.22□□□□□ -0.13
Cbx4O55187 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC14.22□□□□□ -0.13
Cbx4O55187 Gm43073-201ENSMUST00000198200 1189 ntBASIC14.22□□□□□ -0.13
Cbx4O55187 Gm45098-201ENSMUST00000207179 657 ntBASIC14.22□□□□□ -0.13
Cbx4O55187 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC14.22□□□□□ -0.13
Cbx4O55187 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.22□□□□□ -0.13
Cbx4O55187 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cbx4O55187 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms