Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.63■□□□□ 0.89
Trim3Q9R1R2 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim3Q9R1R2 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.63■□□□□ 0.89
Trim3Q9R1R2 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim3Q9R1R2 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
Trim3Q9R1R2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.61■□□□□ 0.89
Trim3Q9R1R2 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim3Q9R1R2 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim3Q9R1R2 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim3Q9R1R2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim3Q9R1R2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim3Q9R1R2 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim3Q9R1R2 Cap2-205ENSMUST00000225824 1634 ntBASIC20.6■□□□□ 0.89
Trim3Q9R1R2 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim3Q9R1R2 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim3Q9R1R2 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Trim3Q9R1R2 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim3Q9R1R2 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim3Q9R1R2 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trim3Q9R1R2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim3Q9R1R2 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim3Q9R1R2 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim3Q9R1R2 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim3Q9R1R2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim3Q9R1R2 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trim3Q9R1R2 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim3Q9R1R2 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.58■□□□□ 0.89
Trim3Q9R1R2 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trim3Q9R1R2 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim3Q9R1R2 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim3Q9R1R2 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Trim3Q9R1R2 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Trim3Q9R1R2 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
Trim3Q9R1R2 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim3Q9R1R2 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim3Q9R1R2 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim3Q9R1R2 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim3Q9R1R2 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim3Q9R1R2 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim3Q9R1R2 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim3Q9R1R2 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim3Q9R1R2 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim3Q9R1R2 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Gm12366-201ENSMUST00000121722 873 ntBASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Gm5786-201ENSMUST00000085368 882 ntBASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim3Q9R1R2 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.52■□□□□ 0.88
Trim3Q9R1R2 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.52■□□□□ 0.88
Trim3Q9R1R2 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Trim3Q9R1R2 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim3Q9R1R2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Trim3Q9R1R2 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim3Q9R1R2 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim3Q9R1R2 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.51■□□□□ 0.87
Trim3Q9R1R2 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim3Q9R1R2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim3Q9R1R2 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim3Q9R1R2 Gm27502-201ENSMUST00000183495 199 ntBASIC20.49■□□□□ 0.87
Trim3Q9R1R2 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim3Q9R1R2 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim3Q9R1R2 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim3Q9R1R2 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim3Q9R1R2 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Trim3Q9R1R2 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim3Q9R1R2 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim3Q9R1R2 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim3Q9R1R2 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.48■□□□□ 0.87
Trim3Q9R1R2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim3Q9R1R2 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim3Q9R1R2 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms