Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Scn11aQ9R053 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
Scn11aQ9R053 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC26.98■■□□□ 1.91
Scn11aQ9R053 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Scn11aQ9R053 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
Scn11aQ9R053 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
Scn11aQ9R053 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
Scn11aQ9R053 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC26.97■■□□□ 1.91
Scn11aQ9R053 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Scn11aQ9R053 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
Scn11aQ9R053 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Scn11aQ9R053 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Scn11aQ9R053 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC26.96■■□□□ 1.91
Scn11aQ9R053 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC26.96■■□□□ 1.91
Scn11aQ9R053 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Scn11aQ9R053 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Scn11aQ9R053 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC26.95■■□□□ 1.9
Scn11aQ9R053 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
Scn11aQ9R053 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Scn11aQ9R053 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Scn11aQ9R053 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Scn11aQ9R053 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
Scn11aQ9R053 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Scn11aQ9R053 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Scn11aQ9R053 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC26.93■■□□□ 1.9
Scn11aQ9R053 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
Scn11aQ9R053 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
Scn11aQ9R053 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC26.92■■□□□ 1.9
Scn11aQ9R053 Serp2-204ENSMUST00000228055 705 ntBASIC26.92■■□□□ 1.9
Scn11aQ9R053 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Scn11aQ9R053 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Scn11aQ9R053 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
Scn11aQ9R053 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Scn11aQ9R053 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Scn11aQ9R053 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Scn11aQ9R053 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Scn11aQ9R053 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Scn11aQ9R053 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Scn11aQ9R053 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
Scn11aQ9R053 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Scn11aQ9R053 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC26.89■■□□□ 1.9
Scn11aQ9R053 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
Scn11aQ9R053 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
Scn11aQ9R053 Gm5297-201ENSMUST00000198555 1171 ntBASIC26.89■■□□□ 1.89
Scn11aQ9R053 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Scn11aQ9R053 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Scn11aQ9R053 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC26.88■■□□□ 1.89
Scn11aQ9R053 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.88■■□□□ 1.89
Scn11aQ9R053 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Scn11aQ9R053 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
Scn11aQ9R053 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Scn11aQ9R053 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC26.86■■□□□ 1.89
Scn11aQ9R053 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC26.86■■□□□ 1.89
Scn11aQ9R053 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Scn11aQ9R053 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Scn11aQ9R053 Gm42699-201ENSMUST00000198104 1657 ntBASIC26.85■■□□□ 1.89
Scn11aQ9R053 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC26.84■■□□□ 1.89
Scn11aQ9R053 Gm45102-201ENSMUST00000207427 857 ntBASIC26.84■■□□□ 1.89
Scn11aQ9R053 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Scn11aQ9R053 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC26.84■■□□□ 1.89
Scn11aQ9R053 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
Scn11aQ9R053 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Scn11aQ9R053 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
Scn11aQ9R053 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
Scn11aQ9R053 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Scn11aQ9R053 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Scn11aQ9R053 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.88
Scn11aQ9R053 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
Scn11aQ9R053 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Scn11aQ9R053 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Scn11aQ9R053 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Scn11aQ9R053 Nsd1-203ENSMUST00000224156 1149 ntBASIC26.81■■□□□ 1.88
Scn11aQ9R053 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Scn11aQ9R053 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Scn11aQ9R053 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Scn11aQ9R053 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Scn11aQ9R053 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Scn11aQ9R053 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC26.8■■□□□ 1.88
Scn11aQ9R053 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC26.8■■□□□ 1.88
Scn11aQ9R053 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Scn11aQ9R053 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Scn11aQ9R053 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Scn11aQ9R053 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC26.79■■□□□ 1.88
Scn11aQ9R053 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Scn11aQ9R053 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Scn11aQ9R053 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Scn11aQ9R053 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
Scn11aQ9R053 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC26.78■■□□□ 1.88
Scn11aQ9R053 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
Scn11aQ9R053 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Scn11aQ9R053 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
Scn11aQ9R053 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Scn11aQ9R053 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Scn11aQ9R053 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Scn11aQ9R053 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Scn11aQ9R053 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Scn11aQ9R053 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Scn11aQ9R053 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC26.74■■□□□ 1.87
Scn11aQ9R053 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC26.74■■□□□ 1.87
Scn11aQ9R053 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms