Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Lima1Q9ERG0 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Lima1Q9ERG0 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.77■■□□□ 1.08
Lima1Q9ERG0 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC21.77■■□□□ 1.08
Lima1Q9ERG0 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Lima1Q9ERG0 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.76■■□□□ 1.07
Lima1Q9ERG0 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Lima1Q9ERG0 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Lima1Q9ERG0 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Lima1Q9ERG0 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.75■■□□□ 1.07
Lima1Q9ERG0 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Lima1Q9ERG0 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Lima1Q9ERG0 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Lima1Q9ERG0 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Lima1Q9ERG0 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Lima1Q9ERG0 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Lima1Q9ERG0 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Lima1Q9ERG0 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Lima1Q9ERG0 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Lima1Q9ERG0 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Lima1Q9ERG0 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Lima1Q9ERG0 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Lima1Q9ERG0 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.72■■□□□ 1.07
Lima1Q9ERG0 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Lima1Q9ERG0 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.71■■□□□ 1.07
Lima1Q9ERG0 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Lima1Q9ERG0 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Lima1Q9ERG0 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Lima1Q9ERG0 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Lima1Q9ERG0 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Lima1Q9ERG0 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.68■■□□□ 1.06
Lima1Q9ERG0 Gm7432-201ENSMUST00000210343 879 ntBASIC21.68■■□□□ 1.06
Lima1Q9ERG0 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Lima1Q9ERG0 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Lima1Q9ERG0 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Lima1Q9ERG0 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Lima1Q9ERG0 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Lima1Q9ERG0 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Lima1Q9ERG0 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Lima1Q9ERG0 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lima1Q9ERG0 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Lima1Q9ERG0 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Lima1Q9ERG0 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.66■■□□□ 1.06
Lima1Q9ERG0 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lima1Q9ERG0 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lima1Q9ERG0 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Lima1Q9ERG0 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lima1Q9ERG0 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Lima1Q9ERG0 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Lima1Q9ERG0 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Lima1Q9ERG0 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Lima1Q9ERG0 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.64■■□□□ 1.06
Lima1Q9ERG0 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.64■■□□□ 1.05
Lima1Q9ERG0 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Lima1Q9ERG0 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.64■■□□□ 1.05
Lima1Q9ERG0 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Lima1Q9ERG0 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC21.64■■□□□ 1.05
Lima1Q9ERG0 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Lima1Q9ERG0 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Lima1Q9ERG0 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Lima1Q9ERG0 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
Lima1Q9ERG0 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Lima1Q9ERG0 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC21.63■■□□□ 1.05
Lima1Q9ERG0 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Lima1Q9ERG0 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Lima1Q9ERG0 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Lima1Q9ERG0 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Lima1Q9ERG0 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Lima1Q9ERG0 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.6■■□□□ 1.05
Lima1Q9ERG0 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.6■■□□□ 1.05
Lima1Q9ERG0 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Lima1Q9ERG0 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Lima1Q9ERG0 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Lima1Q9ERG0 Gm11599-201ENSMUST00000118720 878 ntBASIC21.58■■□□□ 1.05
Lima1Q9ERG0 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Lima1Q9ERG0 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Lima1Q9ERG0 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Lima1Q9ERG0 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.57■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms