Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.24■□□□□ 0.83
Col6a6Q8C6K9 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.24■□□□□ 0.83
Col6a6Q8C6K9 Gm21956-201ENSMUST00000179946 522 ntBASIC20.24■□□□□ 0.83
Col6a6Q8C6K9 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a6Q8C6K9 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a6Q8C6K9 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.23■□□□□ 0.83
Col6a6Q8C6K9 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.22■□□□□ 0.83
Col6a6Q8C6K9 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a6Q8C6K9 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.22■□□□□ 0.83
Col6a6Q8C6K9 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a6Q8C6K9 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.22■□□□□ 0.83
Col6a6Q8C6K9 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a6Q8C6K9 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.22■□□□□ 0.83
Col6a6Q8C6K9 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a6Q8C6K9 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a6Q8C6K9 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col6a6Q8C6K9 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a6Q8C6K9 Etf1-202ENSMUST00000180351 108 ntBASIC20.2■□□□□ 0.82
Col6a6Q8C6K9 Gm13241-201ENSMUST00000094493 780 ntBASIC20.2■□□□□ 0.82
Col6a6Q8C6K9 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.2■□□□□ 0.82
Col6a6Q8C6K9 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a6Q8C6K9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a6Q8C6K9 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a6Q8C6K9 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a6Q8C6K9 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a6Q8C6K9 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a6Q8C6K9 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a6Q8C6K9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Col6a6Q8C6K9 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a6Q8C6K9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a6Q8C6K9 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a6Q8C6K9 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a6Q8C6K9 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Col6a6Q8C6K9 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.16■□□□□ 0.82
Col6a6Q8C6K9 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col6a6Q8C6K9 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.16■□□□□ 0.82
Col6a6Q8C6K9 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a6Q8C6K9 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a6Q8C6K9 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.15■□□□□ 0.82
Col6a6Q8C6K9 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a6Q8C6K9 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a6Q8C6K9 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a6Q8C6K9 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col6a6Q8C6K9 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.14■□□□□ 0.81
Col6a6Q8C6K9 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col6a6Q8C6K9 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
Col6a6Q8C6K9 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col6a6Q8C6K9 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a6Q8C6K9 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.11■□□□□ 0.81
Col6a6Q8C6K9 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Col6a6Q8C6K9 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col6a6Q8C6K9 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.11■□□□□ 0.81
Col6a6Q8C6K9 Gm7417-201ENSMUST00000192950 473 ntBASIC20.11■□□□□ 0.81
Col6a6Q8C6K9 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.11■□□□□ 0.81
Col6a6Q8C6K9 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a6Q8C6K9 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a6Q8C6K9 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a6Q8C6K9 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a6Q8C6K9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Gm12922-201ENSMUST00000120626 809 ntBASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Gm9847-201ENSMUST00000052528 599 ntBASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a6Q8C6K9 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col6a6Q8C6K9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col6a6Q8C6K9 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col6a6Q8C6K9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Col6a6Q8C6K9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
Col6a6Q8C6K9 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Col6a6Q8C6K9 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Col6a6Q8C6K9 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col6a6Q8C6K9 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col6a6Q8C6K9 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.07■□□□□ 0.8
Col6a6Q8C6K9 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.06■□□□□ 0.8
Col6a6Q8C6K9 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col6a6Q8C6K9 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.06■□□□□ 0.8
Col6a6Q8C6K9 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms