Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Gm37136-201ENSMUST00000194368 194 ntBASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ptchd3Q0EEE2 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.22■□□□□ 0.99
Ptchd3Q0EEE2 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Ptchd3Q0EEE2 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ptchd3Q0EEE2 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.22■□□□□ 0.99
Ptchd3Q0EEE2 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.22■□□□□ 0.99
Ptchd3Q0EEE2 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ptchd3Q0EEE2 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.21■□□□□ 0.99
Ptchd3Q0EEE2 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
Ptchd3Q0EEE2 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
Ptchd3Q0EEE2 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.2■□□□□ 0.98
Ptchd3Q0EEE2 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Ptchd3Q0EEE2 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ptchd3Q0EEE2 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ptchd3Q0EEE2 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ptchd3Q0EEE2 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ptchd3Q0EEE2 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ptchd3Q0EEE2 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ptchd3Q0EEE2 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.19■□□□□ 0.98
Ptchd3Q0EEE2 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ptchd3Q0EEE2 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
Ptchd3Q0EEE2 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ptchd3Q0EEE2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Ptchd3Q0EEE2 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ptchd3Q0EEE2 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ptchd3Q0EEE2 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.17■□□□□ 0.98
Ptchd3Q0EEE2 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ptchd3Q0EEE2 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ptchd3Q0EEE2 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ptchd3Q0EEE2 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ptchd3Q0EEE2 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ptchd3Q0EEE2 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.15■□□□□ 0.98
Ptchd3Q0EEE2 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ptchd3Q0EEE2 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ptchd3Q0EEE2 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ptchd3Q0EEE2 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.14■□□□□ 0.98
Ptchd3Q0EEE2 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ptchd3Q0EEE2 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ptchd3Q0EEE2 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ptchd3Q0EEE2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ptchd3Q0EEE2 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ptchd3Q0EEE2 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC21.13■□□□□ 0.97
Ptchd3Q0EEE2 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ptchd3Q0EEE2 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ptchd3Q0EEE2 Gm7432-201ENSMUST00000210343 879 ntBASIC21.13■□□□□ 0.97
Ptchd3Q0EEE2 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ptchd3Q0EEE2 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ptchd3Q0EEE2 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ptchd3Q0EEE2 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ptchd3Q0EEE2 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ptchd3Q0EEE2 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ptchd3Q0EEE2 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ptchd3Q0EEE2 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ptchd3Q0EEE2 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ptchd3Q0EEE2 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ptchd3Q0EEE2 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ptchd3Q0EEE2 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ptchd3Q0EEE2 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ptchd3Q0EEE2 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ptchd3Q0EEE2 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ptchd3Q0EEE2 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.1■□□□□ 0.97
Ptchd3Q0EEE2 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ptchd3Q0EEE2 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.1■□□□□ 0.97
Ptchd3Q0EEE2 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ptchd3Q0EEE2 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ptchd3Q0EEE2 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.08■□□□□ 0.97
Ptchd3Q0EEE2 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ptchd3Q0EEE2 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ptchd3Q0EEE2 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ptchd3Q0EEE2 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Ptchd3Q0EEE2 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ptchd3Q0EEE2 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ptchd3Q0EEE2 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ptchd3Q0EEE2 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ptchd3Q0EEE2 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ptchd3Q0EEE2 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ptchd3Q0EEE2 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ptchd3Q0EEE2 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Ptchd3Q0EEE2 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms