Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Col8a1Q00780 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC18.93■□□□□ 0.62
Col8a1Q00780 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.91■□□□□ 0.62
Col8a1Q00780 Gm21956-201ENSMUST00000179946 522 ntBASIC18.91■□□□□ 0.62
Col8a1Q00780 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.91■□□□□ 0.62
Col8a1Q00780 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col8a1Q00780 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col8a1Q00780 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Col8a1Q00780 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col8a1Q00780 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col8a1Q00780 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Col8a1Q00780 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.9■□□□□ 0.62
Col8a1Q00780 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col8a1Q00780 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col8a1Q00780 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col8a1Q00780 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.9■□□□□ 0.62
Col8a1Q00780 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col8a1Q00780 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col8a1Q00780 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col8a1Q00780 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col8a1Q00780 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col8a1Q00780 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Col8a1Q00780 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col8a1Q00780 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Col8a1Q00780 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col8a1Q00780 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Col8a1Q00780 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col8a1Q00780 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col8a1Q00780 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col8a1Q00780 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col8a1Q00780 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col8a1Q00780 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.87■□□□□ 0.61
Col8a1Q00780 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col8a1Q00780 Fezf2-202ENSMUST00000224023 1917 ntBASIC18.87■□□□□ 0.61
Col8a1Q00780 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col8a1Q00780 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col8a1Q00780 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col8a1Q00780 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Col8a1Q00780 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col8a1Q00780 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC18.86■□□□□ 0.61
Col8a1Q00780 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col8a1Q00780 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col8a1Q00780 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col8a1Q00780 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col8a1Q00780 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Col8a1Q00780 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col8a1Q00780 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.85■□□□□ 0.61
Col8a1Q00780 Gm7417-201ENSMUST00000192950 473 ntBASIC18.85■□□□□ 0.61
Col8a1Q00780 Gm9847-201ENSMUST00000052528 599 ntBASIC18.85■□□□□ 0.61
Col8a1Q00780 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col8a1Q00780 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC18.84■□□□□ 0.61
Col8a1Q00780 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col8a1Q00780 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col8a1Q00780 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.84■□□□□ 0.61
Col8a1Q00780 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col8a1Q00780 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.84■□□□□ 0.61
Col8a1Q00780 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col8a1Q00780 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col8a1Q00780 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col8a1Q00780 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Col8a1Q00780 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col8a1Q00780 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col8a1Q00780 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC18.81■□□□□ 0.6
Col8a1Q00780 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col8a1Q00780 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC18.81■□□□□ 0.6
Col8a1Q00780 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.81■□□□□ 0.6
Col8a1Q00780 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.81■□□□□ 0.6
Col8a1Q00780 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col8a1Q00780 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Col8a1Q00780 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col8a1Q00780 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col8a1Q00780 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Col8a1Q00780 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col8a1Q00780 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col8a1Q00780 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col8a1Q00780 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Col8a1Q00780 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col8a1Q00780 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Col8a1Q00780 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col8a1Q00780 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC18.79■□□□□ 0.6
Col8a1Q00780 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col8a1Q00780 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col8a1Q00780 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col8a1Q00780 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col8a1Q00780 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col8a1Q00780 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col8a1Q00780 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col8a1Q00780 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col8a1Q00780 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Col8a1Q00780 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col8a1Q00780 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col8a1Q00780 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col8a1Q00780 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
Col8a1Q00780 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col8a1Q00780 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Col8a1Q00780 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.77■□□□□ 0.6
Col8a1Q00780 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col8a1Q00780 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col8a1Q00780 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col8a1Q00780 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms