Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Rps24-207ENSMUST00000224568 714 ntBASIC20.88■□□□□ 0.93
Msx1P13297 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msx1P13297 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Msx1P13297 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msx1P13297 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msx1P13297 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msx1P13297 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Msx1P13297 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msx1P13297 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msx1P13297 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Msx1P13297 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Msx1P13297 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msx1P13297 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msx1P13297 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msx1P13297 Gm15820-201ENSMUST00000201566 728 ntBASIC20.86■□□□□ 0.93
Msx1P13297 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Msx1P13297 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Msx1P13297 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.86■□□□□ 0.93
Msx1P13297 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Msx1P13297 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msx1P13297 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Msx1P13297 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.85■□□□□ 0.93
Msx1P13297 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.85■□□□□ 0.93
Msx1P13297 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msx1P13297 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msx1P13297 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Msx1P13297 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msx1P13297 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msx1P13297 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msx1P13297 Gm44428-201ENSMUST00000204474 874 ntBASIC20.84■□□□□ 0.93
Msx1P13297 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Msx1P13297 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.84■□□□□ 0.93
Msx1P13297 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
Msx1P13297 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Msx1P13297 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msx1P13297 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.83■□□□□ 0.93
Msx1P13297 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msx1P13297 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Msx1P13297 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.83■□□□□ 0.92
Msx1P13297 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Msx1P13297 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Msx1P13297 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Msx1P13297 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.82■□□□□ 0.92
Msx1P13297 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Msx1P13297 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.81■□□□□ 0.92
Msx1P13297 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Msx1P13297 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msx1P13297 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.81■□□□□ 0.92
Msx1P13297 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msx1P13297 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.8■□□□□ 0.92
Msx1P13297 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msx1P13297 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Msx1P13297 Gm43566-201ENSMUST00000196851 808 ntBASIC20.8■□□□□ 0.92
Msx1P13297 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msx1P13297 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Msx1P13297 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msx1P13297 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.79■□□□□ 0.92
Msx1P13297 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Msx1P13297 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msx1P13297 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msx1P13297 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msx1P13297 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msx1P13297 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
Msx1P13297 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Msx1P13297 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.78■□□□□ 0.92
Msx1P13297 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msx1P13297 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msx1P13297 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.77■□□□□ 0.92
Msx1P13297 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
Msx1P13297 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msx1P13297 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.77■□□□□ 0.92
Msx1P13297 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msx1P13297 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Msx1P13297 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msx1P13297 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msx1P13297 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Msx1P13297 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.76■□□□□ 0.91
Msx1P13297 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.76■□□□□ 0.91
Msx1P13297 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msx1P13297 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msx1P13297 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Msx1P13297 Gm13238-201ENSMUST00000117655 780 ntBASIC20.75■□□□□ 0.91
Msx1P13297 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msx1P13297 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Msx1P13297 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msx1P13297 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msx1P13297 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Msx1P13297 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Msx1P13297 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.73■□□□□ 0.91
Msx1P13297 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.73■□□□□ 0.91
Msx1P13297 Gm45102-201ENSMUST00000207427 857 ntBASIC20.73■□□□□ 0.91
Msx1P13297 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Msx1P13297 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms