Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Hmgb3O54879 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.37■□□□□ 0.53
Hmgb3O54879 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb3O54879 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.36■□□□□ 0.53
Hmgb3O54879 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb3O54879 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb3O54879 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Hmgb3O54879 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb3O54879 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Hmgb3O54879 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC18.35■□□□□ 0.53
Hmgb3O54879 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb3O54879 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb3O54879 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Hmgb3O54879 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb3O54879 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb3O54879 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Hmgb3O54879 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb3O54879 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb3O54879 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb3O54879 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb3O54879 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Hmgb3O54879 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb3O54879 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb3O54879 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb3O54879 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC18.33■□□□□ 0.52
Hmgb3O54879 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.33■□□□□ 0.52
Hmgb3O54879 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Hmgb3O54879 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb3O54879 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb3O54879 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb3O54879 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Hmgb3O54879 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb3O54879 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb3O54879 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb3O54879 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb3O54879 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb3O54879 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb3O54879 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC18.31■□□□□ 0.52
Hmgb3O54879 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb3O54879 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb3O54879 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.3■□□□□ 0.52
Hmgb3O54879 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Hmgb3O54879 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC18.3■□□□□ 0.52
Hmgb3O54879 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb3O54879 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb3O54879 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb3O54879 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb3O54879 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.29■□□□□ 0.52
Hmgb3O54879 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb3O54879 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb3O54879 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb3O54879 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb3O54879 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb3O54879 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Hmgb3O54879 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb3O54879 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb3O54879 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Hmgb3O54879 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb3O54879 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Hmgb3O54879 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Hmgb3O54879 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb3O54879 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Hmgb3O54879 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Hmgb3O54879 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb3O54879 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Hmgb3O54879 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb3O54879 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb3O54879 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb3O54879 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Hmgb3O54879 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb3O54879 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Hmgb3O54879 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb3O54879 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
Hmgb3O54879 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb3O54879 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb3O54879 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb3O54879 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC18.22■□□□□ 0.51
Hmgb3O54879 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb3O54879 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Hmgb3O54879 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb3O54879 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb3O54879 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb3O54879 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Hmgb3O54879 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb3O54879 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 106.2 ms