Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdhgb8A0A140LI48 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC19.79■□□□□ 0.76
Pcdhgb8A0A140LI48 AC154454.1-201ENSMUST00000225253 216 ntBASIC19.79■□□□□ 0.76
Pcdhgb8A0A140LI48 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdhgb8A0A140LI48 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdhgb8A0A140LI48 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Pcdhgb8A0A140LI48 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Pcdhgb8A0A140LI48 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Pcdhgb8A0A140LI48 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Pcdhgb8A0A140LI48 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Pcdhgb8A0A140LI48 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Pcdhgb8A0A140LI48 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Pcdhgb8A0A140LI48 Gm4799-201ENSMUST00000095396 657 ntBASIC19.77■□□□□ 0.76
Pcdhgb8A0A140LI48 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Pcdhgb8A0A140LI48 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC19.76■□□□□ 0.75
Pcdhgb8A0A140LI48 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Pcdhgb8A0A140LI48 Gm11175-201ENSMUST00000116172 543 ntBASIC19.75■□□□□ 0.75
Pcdhgb8A0A140LI48 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Pcdhgb8A0A140LI48 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
Pcdhgb8A0A140LI48 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Pcdhgb8A0A140LI48 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Pcdhgb8A0A140LI48 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Pcdhgb8A0A140LI48 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Pcdhgb8A0A140LI48 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Pcdhgb8A0A140LI48 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Pcdhgb8A0A140LI48 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Pcdhgb8A0A140LI48 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Pcdhgb8A0A140LI48 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Pcdhgb8A0A140LI48 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Gm42699-201ENSMUST00000198104 1657 ntBASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Mir3960-201ENSMUST00000198213 73 ntBASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Pcdhgb8A0A140LI48 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Pcdhgb8A0A140LI48 Gm13889-201ENSMUST00000099689 1386 ntBASIC19.7■□□□□ 0.74
Pcdhgb8A0A140LI48 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Pcdhgb8A0A140LI48 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Pcdhgb8A0A140LI48 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.7■□□□□ 0.74
Pcdhgb8A0A140LI48 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Pcdhgb8A0A140LI48 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Pcdhgb8A0A140LI48 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Pcdhgb8A0A140LI48 Pkd1-207ENSMUST00000228550 1050 ntBASIC19.67■□□□□ 0.74
Pcdhgb8A0A140LI48 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Pcdhgb8A0A140LI48 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Pcdhgb8A0A140LI48 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Pcdhgb8A0A140LI48 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Pcdhgb8A0A140LI48 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Pcdhgb8A0A140LI48 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC19.66■□□□□ 0.74
Pcdhgb8A0A140LI48 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC19.66■□□□□ 0.74
Pcdhgb8A0A140LI48 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Pcdhgb8A0A140LI48 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Pcdhgb8A0A140LI48 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Pcdhgb8A0A140LI48 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Pcdhgb8A0A140LI48 Gm26766-202ENSMUST00000227544 2347 ntBASIC19.65■□□□□ 0.74
Pcdhgb8A0A140LI48 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Pcdhgb8A0A140LI48 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Pcdhgb8A0A140LI48 Gm6934-201ENSMUST00000194780 1905 ntBASIC19.64■□□□□ 0.73
Pcdhgb8A0A140LI48 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Pcdhgb8A0A140LI48 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Pcdhgb8A0A140LI48 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Pcdhgb8A0A140LI48 Gm12818-201ENSMUST00000117562 1349 ntBASIC19.63■□□□□ 0.73
Pcdhgb8A0A140LI48 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC19.63■□□□□ 0.73
Pcdhgb8A0A140LI48 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 95.9 ms