Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cpsf3Q9QXK7 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cpsf3Q9QXK7 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cpsf3Q9QXK7 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cpsf3Q9QXK7 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC15.67■□□□□ 0.1
Cpsf3Q9QXK7 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Gm6415-201ENSMUST00000118488 348 ntBASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Gm13823-201ENSMUST00000119930 345 ntBASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Mir6956-201ENSMUST00000183598 62 ntBASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 AC154767.3-201ENSMUST00000225150 1342 ntBASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Cpsf3Q9QXK7 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cpsf3Q9QXK7 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Gm27430-201ENSMUST00000184585 107 ntBASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Gm44333-201ENSMUST00000197168 107 ntBASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Cpsf3Q9QXK7 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cpsf3Q9QXK7 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms