Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Gm7370-201ENSMUST00000219471 767 ntBASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Gm27196-201ENSMUST00000184787 2582 ntBASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Pck2-205ENSMUST00000226352 2784 ntBASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc9Q8VC31 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Ccdc9Q8VC31 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Gm6433-201ENSMUST00000118634 875 ntBASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Gm15565-201ENSMUST00000118890 427 ntBASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Gm45058-201ENSMUST00000205810 766 ntBASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc9Q8VC31 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Gm18959-201ENSMUST00000208954 655 ntBASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms