Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Mir449b-201ENSMUST00000104833 80 ntBASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Gm16026-204ENSMUST00000162652 683 ntBASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ushbp1Q8R370 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.32■□□□□ 0.2
Ushbp1Q8R370 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 CT025535.1-201ENSMUST00000227172 491 ntBASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Gm10154-201ENSMUST00000084445 354 ntBASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ushbp1Q8R370 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Rpph1-201ENSMUST00000175096 319 ntBASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ushbp1Q8R370 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms