Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Gm8749-201ENSMUST00000117737 331 ntBASIC11.77□□□□□ -0.52
Col7a1Q63870 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.77□□□□□ -0.52
Col7a1Q63870 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC11.77□□□□□ -0.52
Col7a1Q63870 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Col7a1Q63870 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Col7a1Q63870 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col7a1Q63870 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col7a1Q63870 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col7a1Q63870 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm13570-201ENSMUST00000140763 309 ntBASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm16379-201ENSMUST00000161469 348 ntBASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm8762-201ENSMUST00000193486 339 ntBASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm42929-201ENSMUST00000198374 1286 ntBASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC11.77□□□□□ -0.53
Col7a1Q63870 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col7a1Q63870 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col7a1Q63870 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col7a1Q63870 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col7a1Q63870 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
Col7a1Q63870 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col7a1Q63870 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.76□□□□□ -0.53
Col7a1Q63870 Gm11222-201ENSMUST00000119005 738 ntBASIC11.76□□□□□ -0.53
Col7a1Q63870 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.76□□□□□ -0.53
Col7a1Q63870 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC11.76□□□□□ -0.53
Col7a1Q63870 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC11.76□□□□□ -0.53
Col7a1Q63870 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.76□□□□□ -0.53
Col7a1Q63870 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Gm6944-201ENSMUST00000182449 1006 ntBASIC11.76□□□□□ -0.53
Col7a1Q63870 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC11.76□□□□□ -0.53
Col7a1Q63870 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Col7a1Q63870 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC11.76□□□□□ -0.53
Col7a1Q63870 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.76□□□□□ -0.53
Col7a1Q63870 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 AC161252.3-201ENSMUST00000225465 1549 ntBASIC11.76□□□□□ -0.53
Col7a1Q63870 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col7a1Q63870 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Col7a1Q63870 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Col7a1Q63870 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC11.75□□□□□ -0.53
Col7a1Q63870 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC11.75□□□□□ -0.53
Col7a1Q63870 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC11.75□□□□□ -0.53
Col7a1Q63870 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Col7a1Q63870 AC124457.1-201ENSMUST00000198845 120 ntBASIC11.75□□□□□ -0.53
Col7a1Q63870 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC11.75□□□□□ -0.53
Col7a1Q63870 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Gm10313-201ENSMUST00000095320 1002 ntBASIC11.75□□□□□ -0.53
Col7a1Q63870 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Gm27438-201ENSMUST00000183480 110 ntBASIC11.75□□□□□ -0.53
Col7a1Q63870 Gm9540-201ENSMUST00000188230 478 ntBASIC11.75□□□□□ -0.53
Col7a1Q63870 Gm37922-201ENSMUST00000195596 455 ntBASIC11.75□□□□□ -0.53
Col7a1Q63870 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC11.75□□□□□ -0.53
Col7a1Q63870 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col7a1Q63870 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col7a1Q63870 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col7a1Q63870 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms