Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Gm12585-201ENSMUST00000117307 290 ntBASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Gm11478-201ENSMUST00000117851 599 ntBASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Gm10275-202ENSMUST00000168697 495 ntBASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Gm45059-201ENSMUST00000205558 1077 ntBASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Gm10275-201ENSMUST00000092620 635 ntBASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 AC165157.4-201ENSMUST00000220587 139 ntBASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Gm18624-201ENSMUST00000220966 658 ntBASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Cdk7-205ENSMUST00000225990 1159 ntBASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3aQ3ULJ3 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Gm33320-201ENSMUST00000192232 530 ntBASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3aQ3ULJ3 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3aQ3ULJ3 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3aQ3ULJ3 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms