Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Limch1Q3UH68 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.14■□□□□ 0.33
Limch1Q3UH68 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Rprl2-201ENSMUST00000157150 290 ntBASIC17.14■□□□□ 0.33
Limch1Q3UH68 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC17.14■□□□□ 0.33
Limch1Q3UH68 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Limch1Q3UH68 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gm18889-201ENSMUST00000174284 929 ntBASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gm43474-201ENSMUST00000196415 774 ntBASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gpr146-202ENSMUST00000053120 1040 ntBASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.13■□□□□ 0.33
Limch1Q3UH68 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Limch1Q3UH68 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Gm13464-201ENSMUST00000119418 935 ntBASIC17.12■□□□□ 0.33
Limch1Q3UH68 Rpph1-201ENSMUST00000175096 319 ntBASIC17.12■□□□□ 0.33
Limch1Q3UH68 Gm9726-201ENSMUST00000180321 678 ntBASIC17.12■□□□□ 0.33
Limch1Q3UH68 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms