Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.98□□□□□ -0.01
Sox9Q04887 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.98□□□□□ -0.01
Sox9Q04887 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
Sox9Q04887 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Gm5279-201ENSMUST00000199575 745 ntBASIC14.98□□□□□ -0.01
Sox9Q04887 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.98□□□□□ -0.01
Sox9Q04887 AC156560.2-201ENSMUST00000221232 264 ntBASIC14.98□□□□□ -0.01
Sox9Q04887 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Sox9Q04887 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Sox9Q04887 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Sox9Q04887 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sox9Q04887 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.97□□□□□ -0.01
Sox9Q04887 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC14.97□□□□□ -0.01
Sox9Q04887 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.97□□□□□ -0.01
Sox9Q04887 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC14.97□□□□□ -0.01
Sox9Q04887 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC14.97□□□□□ -0.01
Sox9Q04887 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC14.97□□□□□ -0.01
Sox9Q04887 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sox9Q04887 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
Sox9Q04887 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Gm5940-201ENSMUST00000117582 1068 ntBASIC14.96□□□□□ -0.01
Sox9Q04887 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.96□□□□□ -0.01
Sox9Q04887 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC14.96□□□□□ -0.01
Sox9Q04887 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC14.96□□□□□ -0.01
Sox9Q04887 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Gm7399-201ENSMUST00000032395 858 ntBASIC14.96□□□□□ -0.01
Sox9Q04887 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Sox9Q04887 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Sox9Q04887 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.96□□□□□ -0.01
Sox9Q04887 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sox9Q04887 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.96□□□□□ -0.02
Sox9Q04887 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sox9Q04887 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sox9Q04887 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sox9Q04887 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
Sox9Q04887 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
Sox9Q04887 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sox9Q04887 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sox9Q04887 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sox9Q04887 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.95□□□□□ -0.02
Sox9Q04887 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sox9Q04887 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sox9Q04887 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sox9Q04887 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sox9Q04887 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sox9Q04887 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms