Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm7556-201ENSMUST00000201178 1084 ntBASIC12.08□□□□□ -0.48
Hmgb3O54879 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC12.08□□□□□ -0.48
Hmgb3O54879 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC12.08□□□□□ -0.48
Hmgb3O54879 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm12008-201ENSMUST00000117791 755 ntBASIC12.07□□□□□ -0.48
Hmgb3O54879 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC12.07□□□□□ -0.48
Hmgb3O54879 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm19164-201ENSMUST00000210667 640 ntBASIC12.07□□□□□ -0.48
Hmgb3O54879 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Celf4-206ENSMUST00000224553 1729 ntBASIC12.07□□□□□ -0.48
Hmgb3O54879 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC12.07□□□□□ -0.48
Hmgb3O54879 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Gm37691-201ENSMUST00000192147 2573 ntBASIC12.07□□□□□ -0.48
Hmgb3O54879 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hmgb3O54879 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC12.06□□□□□ -0.48
Hmgb3O54879 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms